OUTPUT OF DifferInt
Besides appearing in a window, results are printed to the following files (for prefix "xxx"):
- xxx.summary.txt
SUMMARY OF OBSERVATIONS AND ALL PERMUTATIONS
DIFFERENTIATION at levels of genetic integration GenePool, MnSLGeno, and MultGeno
and
COVARIATION OF DIFFERENTIATION between levels of integration
> Observed values of the measures
- Complementary genic differentiation "Delta_SD"
- Dispersive genic differentiation "Delta-bar"
- Complementary genotypic differentiation "delta_SD"
- Dispersive genotypic differentiation "delta-bar"
- Mean pairwise genetic distance "Delta"
- Mean pairwise genetic distance "d_0"
> Permutation analysis: Minimum, Confidence Interval, Maximum, P-Value
- Effect of gene-pools and genic association on differentiation: Permutation of alleles among the individuals within populations
- Effect of gene-pools on differentiation: Permutation of individuals among populations
- xxx.alleles.txt, xxx.singlgeno.txt, and xxx.multigeno.txt
More detailed output for the each of the three levels of integration
> Frequency distributions of the genetic types in the populations
> Matrices of elementary genic differences between genetic types
> Optimal shift matrices of the distance measure "Delta" for all comparisons between two populations and between each population and its complement population at all levels of genetic integration - xxx.excluded.txt
List of (multilocus) genotypes that are excluded from the analysis due to missing data - xxx.d0matrix.txt<\font> and xxx.Deltamatrix.txt
List of distance matrices for the different levels of genetic integration - xxx.delta.schnecken-nocj.fig and xxx.DeltaSD.schnecken-nocj.fig
Input files for plot software "xfig" (Linux) or "winfig" (Windows). The "fig"-files are constructed from the files "xxx.delta.schnecken-nocj.in" and "xxx.DeltaSD.schnecken-nocj.in". If the answer to "Make snail graphics" is "yes", the ".fig"-files are plotted on the screen and can be exported in various formats.