• Signer-Hasler, H., Flury, C., Haase, B., Burger, D., Simianer, H., Leeb, T. and Rieder, S. (2012): A Genome-Wide Association Study Reveals Loci Influencing Height and Other Conformation Traits in Horses. PLoS ONE 7(5): e37282. doi:10.1371/journal.pone.0037282.
• Kijas, J.W., Lenstra, J.A., Hayes, B., Boitard, S., Porto Neto, S.L.R., San Cristobal, M., Servin, B., McCulloch, R., Whan, V., Gietzen, K., Paiva, S., Barendse, W., Ciani, E., Raadsma, H., McEwan, J., Dalrymple, B. & other members of the International Sheep Genomics Consortium (2012): Genome-Wide Analysis of the World’s Sheep Breeds Reveals High Levels of Historic Mixture and Strong Recent Selection. PLoS Biol 10(2): e1001258. doi:10.1371/journal.pbio.1001258.
• Charoensook, R., Gatphayak, K., Sharifi, A.R., Chaisongkram, C., Brenig, B. and Knorr, C. (2011):Polymorphisms in the bovine HSP90AB1 gene are associated with heat tolerance in Thai indigenous cattle. Trop Anim Health Prod., 44, 921–928.
• Haberland, A.M., König von Borstel, U., Simianer, H. and König, S. (2012): Integration of genomic information into sport horse breeding programs for optimization of accuracy of selection. Animal, doi:10.1017/S1751731112000626
• Lenstra, J.A., Groeneveld, L.F., Eding, H., Kantanen, J., Williams, J.L., Taberlet, P., Nicolazzi, E.L., Sölkner, J., Simianer, H., Ciani, E., Garcia, J.F., Bruford, M.W., Ajmone-Marsan, P. and Weigend, S. (2012): Molecular tools and analytical approaches for the characterization of farm animal genetic diversity. Anim. Genet., doi: 10.1111/j.1365-2052.2011.02309.
• Ober, U., Ayroles, J.F., Stone, E.A., Richards, S., Zhu, D., Gibbs, R.A., Stricker, C., Gianola, D., Schlather, M., Mackay, T.F.C. and Simianer, H. (2012): Using Whole-Genome Sequence Data to Predict Quantitative Trait Phenotypes in Drosophila melanogaster. PLoS Genet 8(5): e1002685. doi:10.1371/journal.pgen.1002685.
• Ytournel, F., Teyssèdre, S., Roldan, D., Erbe, M., Simianer, H., Boichard, D., Gilbert, H., Druet, T. and Legarra, A. (2012): LDSO: a program to simulate pedigrees and molecular information under various evolutionary forces. J. Anim. Breed. Genet., doi:10.1111/j.1439-0388.2011.00986.x, 1-5.
• Gärke, C.,Ytournel, F., Bed’hom, B., Gut, I., Lathrop, M., Weigend, S. and Simianer, H. (2011): Comparison of SNPs and microsatellites for assessing the genetic structure of chicken populations. Anim. Genet. doi:10.1111/j.1365-2052.2011.02284.x
• Zhang, G., Vahidi, S.M.F.,Ma, Y.H. and Han, J.L. (2011): Limited polymorphisms of two Y-chromosomal SNPs in Chinese and Iranian sheep. Animal Genetics, doi:10.1111/j.1365-2052.2011.02269.x.
• Wensch-Dorendorf, M., Yin, T., Swalve, H.H. and König, S. (2011): Optimal strategies for the use of genomic selection in dairy cattle breeding programs. J Dairy Sci, 94, 8, 4140-4151.
• Qanbari, S., Gianola, D., Hayes, B., Schenkel, F., Miller, S., Moore, S., Thaller, G. and Simianer, H. (2011): Application of Site and Haplotype-Frequency Based Approaches for Detecting Selection Signatures in Cattle. BMC Genomics, 12, 318.
• Albrecht, T., Wimmer, V., Auinger, H.J., Erbe, M., Knaak, C., Ouzunova, M., Simianer, H. and Schön, C.C.(2011): Genome-based prediction of testcross values in maize. Theoretical and Apllied Genetics, 123, 2, 339-350.
• Willam, A and Simianer, H (2011): Tierzucht. Grundwissen Bachelor, Verlag Eugen Ulmer, Stuttgart
  
• Hasler, H, Flury, C, Menet, S, Haase, B, Leeb, T, Simianer, H, Poncet, P A, Rieder, S (2011): Genetic diversity in an indigenous horse breed – implications for mating strategies and the control of future inbreeding. J. Anim. Breed. Genet., 128, 394–406.
• Ober, U., Erbe, M., Long, N., Porcu, E., Schlather, M. and Simianer, H. (2011): Predicting Genetic Values: a Kernel-Based Best Linear Unbiased Prediction with Genomic Data. Genetics, 188, 695-708.
• Pimentel, E, Erbe, M, Koenig, S and Simianer, H (2011): Genome partitioning of genetic variation for milk production and composition traits in Holstein cattle. Front. Gene. 2,19, doi: 10.3389/fgene.2011.00019.
• Schierenbeck, S., Reinhardt, F., Reents, R., Simianer, H. and König, S. (2011): Identification of informative cooperator herds for progeny testing based on yield deviations. J. Dairy Sci., 94, 4, 2071-2082
• Cuc, N.T.K., Weigend, S, Tieu, H V and Simianer, H (2011):Conservation priorities and optimum allocation of conservation funds for Vietnamese local chicken breeds. J. Anim. Breed. Genet., 1–11.
• Edwards, C J, Ginja, C, Kantanen, J, Pérez-Pardal, L, Tresset, A, Stock, F, European Cattle Genetic Diversity Consortium, Gama, L T, Penedo, M C T, Bradley, D G, Lenstra and J A, Nijman, I J (2011): Dual Origins of Dairy Cattle Farming – Evidence from a Comprehensive Survey of European Y-Chromosomal Variation. PLoS ONE 6, 1, e15922.
• Qanbari,S, Hansen, M, Weigend, S, Preisinger, R and Simianer, H (2010): Linkage disequilibrium reveals different demographic history in egg laying chickens. BMC Genetics, doi:10.1186/1471-2156-11-103
• Sharifi, A R,Horst, P and Simianer, H (2010): The effect of frizzle gene and dwarf gene on reproductive performance of broiler breeder dams under high and normal ambient temperatures. Poultry Science, 89, 2356–2369.
• Simianer, H and Köhn, F (2010): Genetic management of the Göttingen Minipig population. Journal of Pharmacological and Toxicological Methods, 62, 3, 221-226.
• Pimentel, E, Bauersachs, S, Tietze, M, Simianer, H, Tetens, J, Thaller, G, Reinhardt, F, Wolf, E and König, S (2010): Exploration of relationships between production and fertility traits in dairy cattle via association studies of SNPs within candidate genes derived by expression profiling. Animal Genetics, doi:10.1111/j.1365-2052.2010.02148.x.
• Forster, R, Ancian, P, Fredholm, M, Simianer, H, Whitelaw, B and under the auspices of the Steering Group of the RETHINK Project (2010): The minipig as a platform for new technologies in toxicology. Journal of Pharmacological and Toxicological Methods, 62, 3, 227-235.
• Cierco-Ayrolles, C, Dejean, S, Legarra, A, Gilbert, H, Druet, T, Ytournel, F, Estivals, D, Oumouhou, N and Mangin, B (2010): Does probabilistic modelling of linkage disequilibrium evolution improve the accuracy of QTL location in animal pedigrees? Genetics Selection Evolution, 42, 38-59.
• Erbe, M, Ytournel,F, Pimentel, E, Sharifi,A R und Simianer, H (2010): Power and robustness of three whole genome association mapping approaches in selected populations. J. Anim. Breed. Genet., 1–12.
• Bader, S R, Kothlow, S, Trapp, S, Schwarz, S, Philipp,H C, Weigend, S, Sharifi, A R, Preisinger, R, Schmahl, W, Kaspers,B, Matiasek, K (2010): Acute paretic syndrome in juvenile White Leghorn chickens resembles late stages of acute inflammatory demyelinating polyneuropathies in humans. J of Neuroinflammation 7, 7
• Biscarini, F, Bovenhuis, H, Ellen, E D, Addo, S and van Arendonk, J A M (2010): Estimation of heritability and breeding values for early egg production in laying hens from pooled data. Poultry Science, 89, 1842–1849
• Boettcher, P J, Tixier-Boichard, M, Toro, M A , Simianer, H, Eding, H, Gandini, G, Joost, S, Garcia, D, Colli, L, Ajmone-Marsan, P and the GLOBALDIV Consortium (2010): objectives, criteria and methods for using molecular genetic data in priority setting for conservation of animal genetic resources. Animal Genetics, doi:10.1111/j.1365-2052.2010.02050.x
• Cuc, NTK, Simianer, H, Eding, H, Tieu, HV, Cuong, VC, Wollny, CBA, Groeneveld, LF and Weigend, S (2010): Assessing genetic diversity of Vietnamese local chicken breeds using microsatellites. Animal Genetics, doi:10.1111/j.1365-2052.2010.02039.x
• Di, R, Vahidi, F, Ma, Y, He, X, Zhao, Q, Han, Q, Guan, W, Chu, M, Sun, W and Pu, Y (2010): Microsatellite analysis revealed genetic diversity and population structure among Chinese cashmere goats. Animal Genetics, doi:10.1111/j.1365-2052.2010.02072.x
• Erbe, M, Ytournel,F, Pimentel, E, Sharifi,A R und Simianer, H (2010): Vergleich von drei Methoden für genomweite Assoziationsstudien in selektierten Populationen. Züchtungskunde, 82, 77–87
• Flury, C, Tapio, M, Sonstegard, T, Drögemüller, C, Leeb, T, Simianer, H, Hanotte, O and Rieder, S (2010): Effective population size of an indigenous Swiss cattle breed estimated from linkage disequilibrium. J. Anim. Breed. Genet. 1–9.
• Gianola, D, Simianer, H and Qanbari, S (2010): A two-step method for detecting selection signatures using genetic markers. Genet. Res., 92, 141–155.
• Gianola, D, Wu, X L, Manfredi, E and Simianer, H (2010): A non-parametric mixture model for genome-enabled prediction of genetic value for a quantitative trait. Genetica, DOI 10.1007/s10709-010-9478-4
• Hoppe, S, Brandt, H R, König, S, Erhardt, G and Gauly, M (2010): Temperament traits of beef calves measured under field conditions and their relationships to performance. J ANIM SCI, doi:10.2527/jas.2008-1557
• König S, Tsehay, F, Sitzenstock, F, von Borstel, U, Schmutz, M, Preisinger, R and Simianer, H (2010): Evaluation of inbreeding in laying hens by applying optimum genetic contribution and gene flow theory. Poultry Sci, 89, 658–667
• Pimentel, E, Sargolzaei, M, Simianer, H, Schenkel, F, Liu, Z, Fries,L A and Queiroz, S (2010): Use of direct and iterative solvers for estimation of SNP effects in genome-wide selection. Gene. and Mol. Bio., 33, 198-204
• Qanbari,S, Pimentel, E, Tetens, J, Thaller, G, Lichtner, P, Sharifi,A R and Simianer, H (2010): A genome-wide scan for signatures of recent selection in Holstein cattle. Animal Genetics, doi:10.1111/j.1365-2052.2009.02016.x
• Qanbari,S, Pimentel, E, Tetens, J, Thaller, G, Lichtner, P, Sharifi,A R and Simianer, H (2010): The pattern of linkage disequilibrium in German Holstein cattle. Animal Genetics, doi:10.1111/j.1365-2052.2009.02011.x
• Sharifi, A R,Horst, P and Simianer, H (2010): The effect of naked neck gene and ambient temperature and their interaction on reproductive traits of heavy broiler dams. Poultry Science, 89, 1360–1371.
• Simianer, H (2010): Tierzuchtprogramme mit Köpfchen – FUGATO+brain. GENOMXPRESS 1.10, 14-16
• Ding, X.D., Zhang, Q., Simianer, H. (2009) Haplotype Reconstruction and Estimation of Haplotype Frequencies from Nuclear Families with One Parent Available and Varying Numbers of Children Using the Exact Likelihood. HUM HERED, 67: 174-175.
• Köhn, F., Sharifi, A.R., Simianer, H. (2009): Genetic analysis of reactivity to humans in Goettingen minipigs. Applied Anim. Beha. Sci. 120: 68–75.
• König, S., H. Simianer, A. Willam (2009). Economic evaluation of genomic breeding programs. J. Dairy Sci., 92: 382–391.
• König, S., Swalve, H. (2009). application of selection index calculations to determine selection strategies in genomic breeding programs. J. Dairy Sci., 92: 5292–5303.
• Maxa J, Borchers N, Thomsen H, Simianer H, Gauly M, Sharifi AR (2009). Auction price of Texel, Suffolk and German white-headed mutton rams: A genetic-statistical study. Small Ruminant Res., doi:10.1016/j.smallrumres.2009.07.011
• Maxa, J., A. R. Sharifi, J. Pedersen, M. Gauly, H. Simianer and E. Norberg (2009). Genetic parameters and factors influencing survival to 24 hours after birth in Danish meat sheep breeds. J. of Anim. Sci., 87: 1888-1895.
• Molaee,V., Osfoori, R., Eskandari Nasab, M.P., Qanbari, S. (2009): Genetic relationships among six Iranian indigenous sheep populations based on microsatellite analysis. Small Ruminant Research, 84: 121–124.
• Niemann, B., König,s., Bruns,E. (2009). Maximaler Zuchtfortschritt bei begrenztem Inzuchtzuwachs im Programm Hannoveraner Springpferdezucht. Züchtungskunde, 81: 51–56.
• Pashmi M, Qanbari S,Ghorashi SA, Sharifi AR, Simianer H (2008) Analysis of Relationship between Bovine Lymphocyte Antigen DRB3.2 Alleles, Somatic Cell Count and milk Traits in Iranian Holstein Population. J ANIM BREED GENET, 126: 296-303.
• Pimentel E C G, König S, Schenkel F S, Simianer H (2009) Comparison of statistical procedures for estimating polygenic effects using dense genome-wide marker data. BMC Proceedings, 3: 12-16.
• Schierenbeck S, König S, Simianer H (2009) Genetic and environmental impact on auction prices for Holstein cows. LIVEST SCI, 121: 327-334.
• Simianer, H, Pimentel E C G (2009) Robust QTL fine mapping by applying a quantitative transmission disequilibrium test to the Mendelian sampling term. J. Anim. Breed. Genet. ISSN 0931-2668
• Tsousis G, Sharifi AR, Hoedemaker M (2009) Increased Risk of Conception Failure in German Holstein Friesian Cows with Chronic Endometritis. Reproduction in Domestic Animals, Blackwell Verlag GmbH.
• Tsousis G, Sharifi AR, Hoedemaker M (2009) Associations between the clinical signs of chronic endometritis with ovarian cysts and body condition loss in German Holstein Friesian cows. J. Vet. Sci., 10: 337-341.
• Zander KK, Drucker AG, Holm-Müller K, Simianer H (2009) Choosing the cargo for Noah's Ark Applying Weitzman's approach to Borana cattle in East Africa. ECOL ECON, doi: 10.1016/j.ecolecon.2009.01.011.
• Antão EM, Glodde S, Li G, Sharifi AR, Homeier T, Laturnus C, Diehl I, Bethe A, Philipp HC, Preisinger R, Wieler LH, Ewers C (2008) The chicken as a natural model for extraintestinal infections caused by avian pathogenic Escherichia coli (APEC). MICROB PATHOGENESIS, 45 (5-6): 361-369.
• Bennewitz J, Simianer H, Meuwissen TH (2008) Investigations on merging breeds in genetic conservation schemes. J DAIRY SCI, 91(6): 2512-2519.
• Ding XD, Zhang Q, Simianer H (2008) PMCHAP: a new approach for haplotype inference using nuclear families with only one parent and multiple offspring. J ANIM BREED GENET, 125(5): 339-341.
• Freyer G, König S, Fischer B, Bergfeld U, Cassell BG (2008) Invited Review: Crossbreeding in dairy cattle from a German perspective of the past and today. J DAIRY SCI, 91: 3725-3743.
• Gernand E, Wassmuth R, Lenz H, von BU, Gauly M, König S (2008) Impact of energy supply of ewes on genetic parameters for fertility and carcass traits in Merino Long Wool sheep. SMALL RUMINANT RES, 75: 80-89.
• Köhn F, Sharifi AR, Täubert H, Malovrh S, Simianer H (2008) Breeding for low body weight in goettingen minipigs. J ANIM BREED GENET, 125: 20-28.
• König S, Brügemann K, Simianer H, Swalve HH (2008) Testherden in Zuchtprogrammen für Milchrinder: Strategien zur Findung von Testherden. ZUCHTUNGSKUNDE, 80: 114-126.
• König S, Chang YM, Borstel UUv, Gianola D, Simianer H (2008) Genetic and phenotypic relationships among milk urea nitrogen, fertiltiy, and milk yield in Holstein cows. J DAIRY SCI, 91: 4372-4382.
• König S, Simianer H (2008) Genomische Selektion-Grundlagen und Perspektiven in der Milchrinderzucht. ZUCHTUNGSKUNDE, 80: 50-60.
• König S, Wu XL, Gianola D, Heringstad B, Simianer H (2008) Exploration of relationships between claw disorders and milk yield in Holstein cows via recursive linear and threshold. J DAIRY SCI, 81: 395-406.
• Muchadeyi FC, Eding H, Simianer H, Wollny CB, Groeneveld E, Weigend S (2008) Mitochondrial DNA D-loop sequences suggest a Southeast Asian and Indian origin of Zimbabwean village chickens. ANIM GENET, 39: 615-622.
• Sharifi AR, Horst P, Simianer H (2008) The effect of frizzle gene and dwarf gene on egg quality of broiler breeder dams under high and temperate ambient temperature. WORLD POULTRY SCI J, 64: 386.
• Täubert H, Bradley DG (2008) COMBI.PL: a computer program to combine data sets with inconsistent microsatellite marker allele size information. Molecular Ecology Resources, 8, 572 – 574. (doi: 10.1111/j.1471-8286.2007.02011.x)
• Ding XD, Zhang Q, Simianer H (2007) A new method for haplotype inference including full sib information. GENETICS, 177: 1929-1940.
• Flury C, Weigend S, Ding X, Täubert H, Simianer H (2007) Haplotype kinship for three populations of the Goettingen minipig. GENET SEL EVOL, 39: 159-179.
• Gernad E, Waßmuth R, von BU, König S (2007) Heterogeneity of variance components for production traits in large-scale dairy farms. LIVEST SCI, 112: 78-89.
• Hansen M, Knorr C, Hall AJ, Broad TE, Brenig B (2007) Sequence analysis of the equine SLC26A2 gene locus on chromosome 14q15-->q21. CYTOGENETIC AND GENOME RESEARCH, 118(1): 55-62.
• Köhn F, König S, Gauly M (2007) Genetische und leistungsbedingte Einflussfaktoren auf die Besuchshäufigkeit im Automatischen Melksystem. ZUCHTUNGSKUNDE, 79: 287-297.
• Köhn F, Sharifi AR, Malovrh S, Simianer H (2007) Estimation of genetic parameters for body weight of the Goettingen minipig with random regression models. J ANIM SCI, 85: 2423-2428.
• Köhn F, Sharifi AR, Simianer H (2007) Modeling the growth of the Goettingen minipig. J ANIM SCI, 85: 84-92.
• König S, Bosselmann F, von BU, Simianer H (2007) Genetic analysis of traits affecting the success of embryo transfer in dairy cattle. J DAIRY SCI, 90: 3945-3954.
• König S, Lessner S, Simianer H (2007) Application of controlling instruments for improvements in cow sire selection. J DAIRY SCI, 90: 1967-1980.
• Muchadeyi FC, Eding H, Wollny CBA, Groeneveld E, Makuza SM, Shamseldin R, Simianer H, Weigend S (2007) Absence of population substructuring in Zimbabwe chicken ecotypes inferred using microsatellite analysis. ANIM GENET, 38: 332-339.
• Muchadeyi F, Wollny C, Eding H, Weigend S, Makuza SM, Simianer H (2007) Variation in village chicken production systems among agro-ecological zones of Zimbabwe. TROP ANIM HEALTH PRO, 39: 453-461.
• Müller U, Mlaouhi A, Sharifi AR, Staufenbil R, Hasselmann L, Tripmacher R, Brockmann GA (2007) Einfluss der Energiekonzentration von Futterrationen in der Jungviehaufzucht auf physiologische Kennwerte und Milchleistung. ZUCHTUNGSKUNDE, 79: 231-242.
• Sharifi AR, Henne H, Tietze M, Simianer H (2007) Die genetische Analyse der Nutzungsdauer beim Schwein. DGfZ-Schriftenreihe, 46: 76-83.
• Simianer H (2007) Accounting for non-indepencence of extinction probabilities in the derivation of conservation priorities based on Weitzman's diversity concept. CONSERV GENET, doi: 10.1007/s10592-007-9319-x.: 1-9.
• Swalve HH, König S (2007) Testherden in Zuchtprogrammen für Milchrinder. 1. Mitteilung: Allgemeine Überlegungen. ZUCHTUNGSKUNDE, 79: 249-263.
• Täubert H, Agena D, Simianer H (2007) Genetic analysis of racing performance in Irish Greyhounds. J ANIM BREED GENET, 124: 117-123.
• Beck J, Bornemann-Kolatzki K, Knorr C, Taeubert H, Brenig B (2006) Molecular characterization and exclusion of porcine GUSB as a candidate gene for congenital hernia inguinalis/scrotalis. BMC Vet Res, 2(1): 14.
• Ding X, Zhang Q, Flury C, Simianer H (2006) Haplotype reconstruction and estimation of haplotype frequencies from nuclear families with only one parent available. HUM HERED, 62: 12-19.
• Flury C, Täubert H, Simianer H (2006) Extension of the concept of kinship, relationship, and inbreeding to account for linked epistatic complexes. LIVEST SCI, 103: 131-140.
• Flury C, Tietze M, Simianer H (2006) Epistatic kinship a new measure of genetic diversity for short-term phylogenetic structures theoretical investigations. J ANIM BREED GENET, 123: 159-171.
• Foulley JL, van SM, Alderson L, Amigues Y, Bagga , Mc BB, Cardellino R, Davoli R, Delgado JV, Fimland E, Gandini GC, Glodek P, Groenen MAM, Hammond K, Harlizius B, Heuven H, Joosten R, Martinez AM, Matassin D, Meyer JN, Peleman J, Ramos AM, Rattink AP, Russo V, Siggen KW, Vega-Pla JL, Olliver L (2006) Genetic Diversity Analysis Using Lowly Polymorphic Dominant Markers. Journal of Heredity (Online), 97: 244-252.
• Gianola D, Simianer H (2006) A Thurstonian model for quantiative genetic analysis of ranks. GENETICS, 174: 1-12.
• König S, Hübner G, Sharifi AR, Bohlsen E, Detterer J, Simianer H, Holtz W (2006) Beziehung zwischen dem somatischen Zellgehalt und dem Erstbesamungserfolg in Milchviehherden Ostfrieslands analysiert mit logistischen Modellen. ZUCHTUNGSKUNDE, 78: 89-101.
• König S, Köhn F, Kuwan K, Simianer H, Gauly M (2006) Use of repeated measures analysis for evaluation of genetic background of dairy cattle behaviour in automatic milking systems. J DAIRY SCI, 89: 3636-3644.
• König S, Simianer H (2006) Approaches to the management of inbreeding and relationship in the German Holstein dairy cattle population. LIVEST SCI, 103: 40-53.
• König S, Swalve HH (2006) Modellkalkulationen zu züchterischen Möglichkeiten auf Klauengesundheit beim Rind. ZUCHTUNGSKUNDE, 78: 345-356.
• König S, Swalve HH (2006) Züchterische Möglichkeiten zur Verbesserung der Klauengesundheit. DGfZ-Schriftenreihe, 43: 49-57.
• Lind B (2006) Ökonomische Gewichte für Merkmale des Gesamtzuchtwertes. DGfZ-Schriftenreihe, 43: 139-147.
• Pinent T, Simianer H, Weigend S (2006) Biodiversity within and between chicken populations. WORLD POULTRY SCI J, 62 Suppl.: 232.
• Reist-Marti SB, Abdulai A, Simianer H (2006) Optimum allocation of conservation funds and choice of conservation programs for a set of African cattle breeds. GENET SEL EVOL, 38: 99-126.
• SanCristobal M, Chevalet C, Haley CS, Joosten R, Rattink AP, Harlizius B, Groenen MAM, Amigues Y, Boscher MY, Russel G, Law A, Davoli R, Russo V, Désautés C, Alderson L, Fimland E, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini GC, Matassino D, Plastow GS, Siggens KW, Laval G, Archibald AL, Milan D, Hammond K, Cardellino R (2006) Genetic diversity within and between European pig breeds using microsatellite markers. ANIM GENET, 37: 189-198.
• SanCristobal M, Chevalet C, Peleman J, Heuven H, Brugmans B, van SM, Joosten R, Rattink AP, Harlizius B, Groenen MAM, Amigues Y, Boscher MY, Russel G, Law A, Davoli R, Russo V, Dèsautes C, Alderson LFE, Bagga M, Delgado JV, Vega-Pla JL, Martinez AM, Ramos M, Glodek P, Meyer JN, Gandini G, Matassino D, Siggens K, Laval G, Archibald A, Milan D, Hammond K, Cardellino R, Haley C, Plastow G (2006) Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers. ANIM GENET, 37: 232-238.
• Schwerin M, Fries R, Simianer H, Swalve H, Wimmers K (2006) Die strukturelle und funktionelle Genomanalyse - neue Wege zum Verstehen des Phänotyps - Stand und Perspektiven. ZUCHTUNGSKUNDE, 78: 1-16.
• Sharifi AR, Horst P, Simianer H, Valle-Zarate A (2006) The effect of frizzle gene and dwarf gene on reproductive performances of broiler breeder dams under high and normal ambient temperature. WORLD POULTRY SCI J, 62, Suppl.: 213.
• Simianer H, Weigend S, Rath D (2006) Strategische Ansätze zur Erhaltung und Nutzung genetischer Diversität innerhalb und zwischen Nutztierpopulationen. Agrarspectrum, 39: 33-50.
• Wimmers K, Schellander K, Simianer H, Fries R, Maak S, Thaller G (2006) HeDiPig - Entwicklung neuer molekulargenetischer Werkzeuge zur Prävention von Erbdefekten beim Schwein. GenomXPress, 3: 11-13.
• König S (2005) Estimation of variance components for production and fertility traits in Nothern Thai dairy cattle to define optimal breeding strategies. ARCH TIERZUCHT, 48: 233-246.
• König S (2005) Genetic Relationships for dairy performance between large-scale and small-scale farm conditions. J DAIRY SCI, 88: 4087-4096.
• König S, Mirbach D (2005) Kalkulationen zur Ökonomie der Nutzungsdauer in Milchviehbetrieben. DLG-Publikation, 11: 33-38.
• König S, Sharifi AR, Wentrot H, Landmann D, Eise M, Simianer H (2005) Genetic parameters of claw and foot disorders estimated with logistic models. J DAIRY SCI, 88: 3316-3325.
• Müller U, Sharifi AR, Staufenbiel R, Hasselmann L, Tripmacher R, Wiebe J, Brockmann GA (2005) Rearing diet effects on body condition and milk performance in forst lactating dairy cows. A longitudinal study. ARCH TIERZUCHT, 48: 417-427.
• Sharifi AR (2005) Reproduktives Adaptationsvermögen von Broiler-Muttertieren bei hohen Umwelttemperaturen unter Nutzung spezieller Majorgene. ARCH GEFLUGELKD, 69: 235-237.
• Simianer H (2005) Conservation programmes for African cattle: design, cost and benefits. J ANIM BREED GENET, 122: 95-109.
• Simianer H (2005) Using expected allele number as objective function to design between and within breed conservation of farm animal biodiversity. J ANIM BREED GENET, 122 (3): 177-187.
• Simianer H (2005) Perspektiven der Tierzuchtwissenschaft. ZUCHTUNGSKUNDE, 122: 426-435.
• Simianer H (2005) An assessment of European pig diversity using molecular markers: Partitioning of diversity among breed. CONSERV GENET, 6: 729-741.
• Simianer H (2005) Decision making in livestock conservation. Ecological Economics, 53: 559– 572.
• Baumung R, Simianer H, Hoffmann I (2004) Genetic diversity studies in farm animals: a survey. J ANIM BREED GENET, 121: 361-373.
• Glodek P, Kratz R, Schulz E, Flachowsky G (2004) Der Einfluss unterschiedlicher Vaterrassen in praxisüblichen Schweinekreuzungen auf deren Ansatzleistung, Schlachtkörperzusammensetzung sowie Fleisch- und Fettbeschaffenheit. ARCH TIERZUCHT, 47: 59-74.
• Gongora J, Spencer P, Fleming P, Mason R, Garkavenko O, Lee JH, Meyer JN, Droegemueller C, Moran C (2004) Phylogenetic relationships of Australian and New Zealand feral pigs assesssed by mitochondrial control region sequence and nuclear GPIP genotype. MOL PHYLOGENET EVOL, 33: 339-348.
• Knorr C, Täubert H, Peters U, Brenig B (2004) Characterization of two SNPs (single nucleotide polymorphisms) in the porcine INSL3 gene and their exclusion as a common genetic basis of hernia inguinalis in pigs. BIOCHEM GENET, 42: 11-19.
• Pfeiffer I, Volkel I, Taubert H, Brenig B (2004) Forensic DNA-typing of dog hair: DNA-extraction and PCR amplification. FORENSIC SCI INT, 141(2-3): 149-51.
• Simianer H (2004) Decision making in livestock conservation. ECOL ECON, 122: 95-109.
• Simianer H (2004) Möglichkeiten der markergestützten Selektion. DGfZ-Schriftenreihe, 33: 125-138.
• Simianer H, Karberg S, Friebe R (2004) Revolution im Schweinestall. TECHNOL REV, 1: 1-1.
• Glodek P (2003) Nutztierzüchtung von der Tierbeurteilung über systematische Leistungszuchtprogramme zur Verwaltung der genetischen Variabilität und zur molekularen Tierzucht: Von der Tierbeurteilung zu wissenschaftlich geplanten Leistungszuchtprogrmmen. ZUCHTUNGSKUNDE, 75: 309-316.
• Reist-Marti S B, Simianer H, Gibson J, Hanotte O, Rege J E O (2003) Weitzman’s Approach and Conservation of Breed Diversity: an Application to African Cattle Breeds. Conservation Biology, 17: 1299–1311
• Simianer H (2003) Reproduction methods: Which technique is the best? Agrifuture, 4: 20-22.
• Simianer H (2003) Welche Technik ist die beste? DLG-Publikation, (10): 20-23.
• Simianer H, König S (2003) Ist Inzucht ein Problem in der deutschen Holsteinzucht? DLG-Publikation, (3): 40-43.
• Simianer H, Marti S, Gibson J, Hanotte O, Rege J (2003) An approach to the optimal allocation of conservation funds to minimize losses of genetic diversity between livestock breeds. ECOL ECON, (45): 377-392.
• Simianer H, Meyer J (2003) Past and future activities to harmonize farm animal biodiversity studies on a global scale. Arch. Zootec., (52): 193-199.
• Täubert H, Henne H (2003) Große Würfe und wenig Ferkelverluste - ein erreichbares Zuchtziel beim Schwein? ZUCHTUNGSKUNDE, (75): 442-451.
• Chainetr W, Glodek P, Brandt H, Möllers B, Henning M, Kallweit E, Fischer K (2002) Systematische Gebrauchskreuzung als Möglichkeit der Erhaltung vom Aussterben bedrohter Landschweinrassen. ARCH TIERZUCHT, 45: 35-43.
• Eding H, Crooijmans RPMA, Groenen MAM, MeuwissenT HE (2002) Assessing the contribution of breeds to genetic diversity in consercation schemes. GENET SEL EVOL, 34: 613-633.
• Glodek P (2002) Entwicklungstendenzen in der Nutztierproduktion und Konsequenzen für die Tierzuchtwissenschaft. CAU-Schriftenreihe, 96: 17-28.
• Simianer H (2002) Gentests helfen bei der Erbfehlerselektion. Top Genetik, 11: 28-31.
• Simianer H, König S (2002) Ist Zucht auf Krankheitsresistenz erfolgreich? ZUCHTUNGSKUNDE, (74): 413-425.
• Simianer H (2002). Vorstudie und Abschließende statistische Auswertung. In: Molekulargenetische Differenzierung verschiedener Rotviehpopulationen. Schriftenreihe des BMVEL, Reihe A 'Angewandte Wissenschaften', Bd. 493, Landwirtschaftsverlag, Münster-Hiltrup, 44-88. pdf